Short answer: No, and the limitation is Xero, not Link My Books.
If you sell across more than one VAT jurisdiction (for example EU and UK), you might expect the VAT for each country to be separated automatically. That isn't something Link My Books or Xero can do on its own.
Why: Xero is set up to handle VAT for one country per organisation, so it can't automatically split EU VAT from UK VAT within the same account.
What to do instead: Businesses with multi-jurisdiction VAT obligations use a dedicated VAT compliance tool alongside Xero. We work closely with Simply VAT, who handle exactly this kind of multi-country VAT setup. Link My Books then takes care of the bookkeeping and reconciliation on top of that.
Want an introduction to Simply VAT? Just ask our support team and we'll connect you. 😊
Note: this is not the same as setting a single country's sales to zero or standard rate. For that, you can choose the tax rate per scenario in Settings → Accounts & Taxes. See Setting Up UK VAT & Tax Rate Mappings Across Sales Channels.